UniProt Go

UniProt GOA (Uniprot GO Annotation)


http://www.ebi.ac.uk/GOA
Readme file

UniProt (Swiss-Prot and TrEMBL)

gene_association.goa_uniprot 

Locations: 
ftp://ftp.geneontology.org/.../gene_association.goa_uniprot.gz ftp://ftp.ebi.ac.uk/.../gene_association.goa_uniprot.gz 

This file contains all GO annotations for proteins in the UniProt KnowledgeBase (UniProtKB).

Read me file ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gp_association_readme 

GAF 2.0 file format

 colNames <- c("DB",  "DB_Object_ID",  "DB_Object_Symbol",  "Qualifier",  "GO_ID",  "DB:Reference",  "Evidence",  "With",  "Aspect",  "DB_Object_Name",  "Synonym",  "DB_Object_Type",  "Taxon_ID",  "Date",  "Assigned_By",  "Annotation_Extension",  "Gene_Product_Form_ID")

17 columns

gene_association.goa_arabidopsis 

Locations:
ftp://ftp.geneontology.org/.../gene_association.goa_arabidopsis.gz ftp://ftp.ebi.ac.uk/.../gene_association.goa_arabidopsis.gz 

This file contains the GO assignments for the proteins of the arabidopsis UniProtKB Complete 
Proteome. 

Read me file ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/ARABIDOPSIS/README 

Extras

might search for individual IDs in the uniref90DB
http://www.ebi.ac.uk/ebisearch/search.ebi?db=uniref90&t=B9DGW5

I might check Arabiposis annotation from TAIR10
ftp://ftp.arabidopsis.org/home/tair/Ontologies/Gene_Ontology/ATH_GO_GOSLIM.txt